SNP Profiles of UF 712 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	TT	CC	GG	TT	AA	CC	TT	AA	GG	AA	CC	AA
1._RUQ_1683	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
2._RUQ_1638	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
3._UF_712	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
4._RUQ_1638	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
5._RUQ_1638	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
6._UF_712	_	_	_	_	_	_	_	CC	_	_	_	_	_	_
7._GC-01-089-5-06	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
8._GC-01-089-5-06	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
9._GC-01-089-5-06	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
10._GC-01-089-5-06	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
11._UF_712	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
12._UF_712	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
13._UF_712	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
14._UF_712	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
15._RUQ_1683	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
16._MITC-000039	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
17._MITC-000350	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	CC	AA	CC	AA	AA	GG	AA	CC	TT	AA	CC	GG
1._RUQ_1683	AA	_	_	_	_	AA	_	GG	_	CC	_	_	_	_
2._RUQ_1638	AA	_	_	_	_	AA	_	GG	_	CC	_	_	_	_
3._UF_712	_	_	_	_	_	AA	_	GG	_	_	_	_	_	GG
4._RUQ_1638	_	_	_	_	_	AA	_	GG	_	_	_	_	_	GG
5._RUQ_1638	_	_	_	_	_	AA	_	GG	_	_	_	_	_	GG
6._UF_712	_	_	_	_	_	AA	_	GG	_	_	_	_	_	GG
7._GC-01-089-5-06	AA	_	_	_	_	AA	_	GG	_	CC	_	_	_	AA
8._GC-01-089-5-06	AA	_	_	_	_	AA	_	GG	_	CC	_	_	_	AA
9._GC-01-089-5-06	AA	_	_	_	_	AA	_	GG	_	CC	_	_	_	AA
10._GC-01-089-5-06	AA	_	_	_	_	AA	_	GG	_	CC	_	_	_	AA
11._UF_712	_	_	_	_	_	AA	_	GG	_	_	_	_	_	AA
12._UF_712	_	_	_	_	_	AA	_	GG	_	_	_	_	_	AA
13._UF_712	_	_	_	_	_	AA	_	GG	_	_	_	_	_	AA
14._UF_712	_	_	_	_	_	AA	_	GG	_	_	_	_	_	AA
15._RUQ_1683	AA	_	_	_	_	AA	_	GG	_	GG	_	_	_	_
16._MITC-000039	AA	_	_	_	_	AA	_	GG	_	GG	_	_	_	_
17._MITC-000350	AA	_	_	_	_	AA	_	GG	_	GG	_	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	TT	GG	AA	CC	TT	CC	AA	CC	GG	GG	CC	AA	CC
1._RUQ_1683	_	TT	GG	AA	_	_	CC	_	_	GG	-	_	AA	CC
2._RUQ_1638	_	TT	GG	AA	_	_	CC	_	_	GG	-	_	AA	CC
3._UF_712	_	_	GG	_	_	_	_	_	_	GG	_	_	AA	_
4._RUQ_1638	_	_	GG	_	_	_	_	_	_	GG	_	_	AA	_
5._RUQ_1638	_	_	GG	_	_	_	_	_	_	GG	_	_	AA	_
6._UF_712	_	_	GG	_	_	_	_	_	_	GG	_	_	AA	_
7._GC-01-089-5-06	_	TT	GG	AA	_	_	CC	_	CC	GG	GG	_	AA	CC
8._GC-01-089-5-06	_	TT	GG	AA	_	_	CC	_	CC	GG	GG	_	AA	CC
9._GC-01-089-5-06	_	TT	GG	AA	_	_	CC	_	CC	GG	GG	_	AA	CC
10._GC-01-089-5-06	_	TT	GG	AA	_	_	CC	_	CC	GG	GG	_	AA	CC
11._UF_712	_	_	GG	_	_	_	_	_	_	GG	_	_	AA	_
12._UF_712	_	_	GG	_	_	_	_	_	_	GG	_	_	AA	_
13._UF_712	_	_	GG	_	_	_	_	_	_	GG	_	_	AA	_
14._UF_712	_	_	GG	_	_	_	_	_	_	GG	_	_	AA	_
15._RUQ_1683	_	_	CC	AA	_	_	CC	_	GG	CC	GG	_	AA	_
16._MITC-000039	_	_	CC	AA	_	_	CC	_	GG	CC	GG	_	AA	_
17._MITC-000350	_	_	CC	AA	_	_	CC	_	GG	CC	GG	_	AA	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	AA	CC	GG	CC	CC	GG	AA	CC	GG	GG	TT	AA	CC
1._RUQ_1683	_	_	_	_	_	_	_	_	_	GG	_	_	_	CC
2._RUQ_1638	_	_	_	_	_	_	_	_	_	GG	_	_	_	CC
3._UF_712	_	_	_	GG	_	CC	_	_	_	GG	_	_	_	CC
4._RUQ_1638	_	_	_	GG	_	CC	_	_	_	GG	_	_	_	CC
5._RUQ_1638	_	_	_	GG	_	CC	_	_	_	GG	_	_	_	CC
6._UF_712	_	_	_	GG	_	CC	_	_	_	GG	_	_	_	CC
7._GC-01-089-5-06	_	_	_	GG	_	CC	_	_	_	GG	_	_	_	CC
8._GC-01-089-5-06	_	_	_	GG	_	CC	_	_	_	GG	_	_	_	CC
9._GC-01-089-5-06	_	_	_	GG	_	CC	_	_	_	GG	_	_	_	CC
10._GC-01-089-5-06	_	_	_	GG	_	CC	_	_	_	GG	_	_	_	_
11._UF_712	_	_	_	GG	_	CC	_	_	_	GG	_	_	_	CC
12._UF_712	_	_	_	GG	_	CC	_	_	_	GG	_	_	_	CC
13._UF_712	_	_	_	GG	_	CC	_	_	_	GG	_	_	_	CC
14._UF_712	_	_	_	GG	_	CC	_	_	_	GG	_	_	_	_
15._RUQ_1683	_	_	_	GG	_	_	_	_	_	CC	_	_	_	GG
16._MITC-000039	_	_	_	GG	_	_	_	_	_	CC	_	_	_	GG
17._MITC-000350	_	_	_	GG	_	_	_	_	_	CC	_	_	_	GG

	57	58
_Input profile	CT	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1683	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_1638	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._UF_712	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._RUQ_1638	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._RUQ_1638	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._UF_712	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-089-5-06	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-089-5-06	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-089-5-06	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-01-089-5-06	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._UF_712	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._UF_712	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._UF_712	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._UF_712	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._RUQ_1683	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._MITC-000039	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._MITC-000350	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: UF_712 RUQ_1683

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._UF_712 RUQ_1683

identical
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._UF_712 RUQ_1638

identical
15 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._UF_712

identical
12 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

4._UF_712 RUQ_1638

identical
12 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

5._UF_712 RUQ_1638

identical
12 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

6._UF_712

identical
11 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 6 Row 39 34_36

Dapeng Zhang, 2016

7._UF_712 GC-01-089-5-06

95 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._UF_712 GC-01-089-5-06

95 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._UF_712 GC-01-089-5-06

95 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._UF_712 GC-01-089-5-06

94.7 %
19 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._UF_712

91.7 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 2

Dapeng Zhang, 2016

12._UF_712

91.7 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 4

Dapeng Zhang, 2016

13._UF_712

91.7 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

14._UF_712

90.9 %
11 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 3

Dapeng Zhang, 2016

15._UF_712 RUQ_1683

62.5 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._UF_712 MITC-000039

62.5 %
16 shared markers

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USDA-SHRS, United States of America

17._UF_712 MITC-000350

62.5 %
16 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP602	25	TcSNP640
26	TcSNP642	27	TcSNP644	28	TcSNP645	29	TcSNP660	30	TcSNP702
31	TcSNP723	32	TcSNP731	33	TcSNP739	34	TcSNP800	35	TcSNP823
36	TcSNP835	37	TcSNP836	38	TcSNP872	39	TcSNP899	40	TcSNP945
41	TcSNP998	42	TcSNP999	43	TcSNP1010	44	TcSNP1019	45	TcSNP1053
46	TcSNP1062	47	TcSNP1112	48	TcSNP1144	49	TcSNP1205	50	TcSNP1230
51	TcSNP1237	52	TcSNP1253	53	TcSNP1275	54	TcSNP1293	55	TcSNP1401
56	TcSNP1458	57	TcSNP1524	58	TcSNP1527